Improve installation and organization

6 files changed, 570 insertions, 0 deletions

diff --git a/.vifm/colors/default b/.vifm/colors/default
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+" You can edit this file by hand.
+" The " character at the beginning of a line comments out the line.
+" Blank lines are ignored.
+
+" The Default color scheme is used for any directory that does not have
+" a specified scheme and for parts of user interface like menus. A
+" color scheme set for a base directory will also
+" be used for the sub directories.
+
+" The standard ncurses colors are:
+" Default = -1 = None, can be used for transparency or default color
+" Black = 0
+" Red = 1
+" Green = 2
+" Yellow = 3
+" Blue = 4
+" Magenta = 5
+" Cyan = 6
+" White = 7
+
+" Available style values (some of them can be combined):
+" bold
+" underline
+" reverse or inverse
+" standout
+" none
+
+" Vifm supports 256 colors you can use color numbers 0-255
+" (requires properly set up terminal: set your TERM environment variable
+" (directly or using resources) to some color terminal name (e.g.
+" xterm-256color) from /usr/lib/terminfo/; you can check current number
+" of colors in your terminal with tput colors command)
+
+" highlight group cterm=style ctermfg=foreground_color ctermbg=background_color
+
+highlight Win cterm=none ctermfg=white ctermbg=black
+highlight Directory cterm=bold ctermfg=cyan ctermbg=default
+highlight Link cterm=bold ctermfg=yellow ctermbg=default
+highlight BrokenLink cterm=bold ctermfg=red ctermbg=default
+highlight Socket cterm=bold ctermfg=magenta ctermbg=default
+highlight Device cterm=bold ctermfg=red ctermbg=default
+highlight Fifo cterm=bold ctermfg=cyan ctermbg=default
+highlight Executable cterm=bold ctermfg=green ctermbg=default
+highlight Selected cterm=bold ctermfg=magenta ctermbg=default
+highlight CurrLine cterm=bold ctermfg=default ctermbg=blue
+highlight TopLine cterm=none ctermfg=black ctermbg=white
+highlight TopLineSel cterm=bold ctermfg=black ctermbg=default
+highlight StatusLine cterm=bold ctermfg=black ctermbg=white
+highlight WildMenu cterm=underline,reverse ctermfg=white ctermbg=black
+highlight CmdLine cterm=none ctermfg=white ctermbg=black
+highlight ErrorMsg cterm=none ctermfg=red ctermbg=black
+highlight Border cterm=none ctermfg=black ctermbg=white
diff --git a/.vifm/colors/matrix b/.vifm/colors/matrix
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+highlight Win             cterm=none ctermfg=green    ctermbg=black
+
+highlight TopLine         cterm=none ctermfg=green       ctermbg=none
+highlight TopLineSel      cterm=none ctermfg=green       ctermbg=none
+highlight StatusLine      cterm=none ctermfg=green       ctermbg=none
+highlight Border          cterm=none ctermfg=green       ctermbg=none
+
+highlight Selected        cterm=bold ctermfg=red    ctermbg=default
+highlight CurrLine        cterm=bold ctermfg=black    ctermbg=green
+
+highlight WildMenu        cterm=underline,reverse ctermfg=white ctermbg=black
+highlight CmdLine         cterm=none ctermfg=white ctermbg=black
+highlight ErrorMsg        cterm=none ctermfg=red ctermbg=black
+
+highlight Directory       cterm=none ctermfg=blue ctermbg=default
+highlight Link            cterm=none ctermfg=yellow ctermbg=default
+highlight BrokenLink      cterm=none ctermfg=red ctermbg=default
+highlight Socket          cterm=none ctermfg=yellow ctermbg=default
+highlight Device          cterm=none ctermfg=yellow ctermbg=default
+highlight Fifo            cterm=none ctermfg=yellow ctermbg=default
+highlight Executable      cterm=none ctermfg=green ctermbg=default
diff --git a/.vifm/colorschemes b/.vifm/colorschemes
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+# You can edit this file by hand.
+# The # character at the beginning of a line comments out the line.
+# Blank lines are ignored.
+
+# The Default color scheme is used for any directory that does not have
+# a specified scheme.  A color scheme set for a base directory will also
+# be used for the sub directories.
+
+# The standard ncurses colors are: 
+# Black = 0
+# Red = 1
+# Green = 2
+# Yellow = 3
+# Blue = 4
+# Magenta = 5
+# Cyan = 6
+# White = 7
+
+# COLORSCHEME=OneWordDescription
+# DIRECTORY=/Full/Path/To/Base/Directory
+# COLOR=Window_name=foreground_color_number=background_color_number
+
+
+COLORSCHEME=Default
+DIRECTORY=/
+COLOR=MENU=white=black
+COLOR=BORDER=black=white
+COLOR=WIN=white=black
+COLOR=STATUS_BAR=white=black
+COLOR=CURR_LINE=white=blue
+COLOR=DIRECTORY=cyan=black
+COLOR=LINK=yellow=black
+COLOR=SOCKET=magenta=black
+COLOR=DEVICE=red=black
+COLOR=EXECUTABLE=green=black
+COLOR=SELECTED=magenta=black
+COLOR=CURRENT=blue=black
diff --git a/.vifm/vifm-help.txt b/.vifm/vifm-help.txt
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+The basic vi key bindings are used to move through the files and popup 
+	windows.
+
+			k is up
+			j is down
+
+	h is updir	
+	l is handle file and is the same as Return.
+
+	Ctrl-c or the Escape key will cancel most operations.
+	Ctrl-l will clear and redraw the screen.
+	
+	gg top of list
+	G bottom of list
+	cw change word is used to rename a file.
+	m [a-z][A-Z][0-9] to set bookmark
+	' letter to goto bookmark
+	v start or stop visualy selecting files.  This works with the j and k keys
+		for movement.  This is different then in vi in that v in visual mode will
+		leave the selected files highlighted.  If you want to clear the selected 
+		files Ctrl-c or Esc will unselect the files.
+	dd - the default setting is to move the selected files to the trash
+		directory.  
+	yy - will yank the selected files.
+	p - will copy the yanked files to the current directory or move the files 
+		to the current directory if they were deleted with dd or :d or if the
+		files were yanked 'yy' from the Trash directory.
+
+	Space or Tab to switch lists.
+
+	Most movement commands also accept a count  12j would move down 12 lines.
+	[count] % percent of file list
+	[count] j or k
+	[count] G or gg
+	[count] dd or yy the count is from the current file downward.
+	:[count] user command is not yet implemented.
+	:[count] command
+		 The only builtin :[count] command is :[count]d[elete].  :3d would delete 
+		 three files starting at the current file position moving down.
+
+  :number - move to the line number :12  would move to the 12th line.
+		:0 move to the top of the list.
+		:$ move to the bottom of the list.
+
+	Return  or l -  handle file
+		Default file type program or if on a directory enter the directory
+
+	Ctrl-g toggles full file information window.
+	Ctrl-b - jump back one page.
+	Ctrl-f - jump forward one page.
+
+	/regular expression pattern - will highlight all files matching the pattern 
+	in the current file list. /\.c$ would highlight all the .c files.
+		N find previous match.
+		n find next match.
+
+	Files can also be tagged or selected with 't'.  Pressing 't' on a selected 
+	file will unselect it.  This can be used by itself to select files or with a 
+	/search pattern  or with visually selected files.
+
+	:commands
+	:com is a menu of user commands
+	:com name action - will set a new user command 
+		Unlike vim user commands do not have to start with a capital letter.
+		User commands are run in a shell by default.  To run a command in 
+		the background you must set it as a background command with & at the end 
+		of the commands action.
+		:com rm rm %f &
+
+	:apropos manpage - will create a menu with the results from the 
+		apropos command.
+	:com! name action - will overwrite a preciously set command.
+	:delc command_name will remove the command_name user command
+	:fil regular_expression pattern will filter the files out of the directory 
+		listing that match the regular expression.
+		:fil \.o$ - would filter all files ending in .o from the filelist.
+	:empty will permanently remove 'rm -fr' files from the Trash directory.
+	:locate filename - will create a menu with the results from the locate
+		command.
+	:sh will start a shell
+	:q or :x will exit vifm
+	:! program will execute the program in a shell
+		:!command &   will run the process in the background.
+			programs that write to stdout like ls will create an error message
+			showing partial output of the command.
+	:!!  same as :! but will pause the screen before returning to vifm.
+		:!!ls -l
+	:e load file into vi
+	:only - switch to a one window view.
+	:pwd - show the present working directory 
+	:ch[ange] - create a menu window to alter a files properties.
+	:cd - change directory
+		:cd ~/bin
+	:s[ort] - popup menu of different sorting methods
+	:sp[lit] - switch to a two window view.
+	:his[tory] - popup menu of directories visited
+	:jobs - shows menu of current backgrounded processes.
+	:view - toggle on and off the quick file view.
+	:h[elp] - this crude help file
+	:marks - popup menu of bookmarks
+	:screen toggles whether to use the screen program or not.
+	:sync - change the other panel to the current panel directory.
+
+
+command macros
+	%a user arguments
+	%f all of the selected files
+	%F all of the selected files in the other directory list.
+	%d current directory name
+	%D other file list directory name
+	:com mv mv %f %D
+		would set the mv command to mv all of the selected files to the other
+		directory.
+
+		If you want a command to accept arguments you must use %a.
+		:com mkdir mkdir %a &
+		:com mygrep vim "+grep %a"
+		%a is simply replaced with the user arguments and the arguments are 
+		considered to be optional.   
+		:com lsl ls -l %a | less  - would run ls -l | less with or without 
+		an argument being given.  
+
+search patterns can be set with :com name /pattern
+	:com backup /~$
+	
+	
+	file filters
+	The basic vim folding key bindings are used for filtering files.
+	zO show the filtered files
+	zM Filter the files matching the filename filter.
+	zo show all the dot files
+	zm filter all the .dot files
+	zf filter all the selected files
+		This will work with all selecting methods.  Visually selecting files,
+		using a / search pattern or in combination with 't'.
+	:fil[ter] regular expression
+	:in[vert] invert the filter
+	All directorys will show the ../ file no matter what the filter setting is
+	with the exception of the / directory.
+	Each file list has its own filter.
+	filtered files are not checked in / search or :commands
+
+	file name filters can be set with :com name fil pattern
+																	:com ofiles fil \.o$
+
+Configuration.
+
+	The default configuration file is ~/.vifm/vifmrc.
+	If you want to change any settings vifm must not be running when you edit 
+	the file as it will overwrite any changes you make when it exits.
+
+	Screen configuration.  If you use the screen program, vifm can be configured
+	to use a new screen window for opening files or running :!programs.
+
+Misc.
+	Ctrl-c or Escape to clear all selected files
+
+	vifm.vim is a vim plugin that allows the use of vifm from vim.  It is
+	included in the source tarball but it is not installed by default and must 
+	be manually placed in either the default vim/plugin directory or in 
+	~/.vim/plugin/ 
+	To use vifm to load a file into a running vim use the following commands:
+		:Edit - open a file in the current buffer.
+		:Split - split the buffer and open a file.
+		:Vsplit - vertically split a buffer and open a file.
+		:Diff - open a file to compare to the current file using the vim :diff
+			command.
+	You can edit the vifm.vim script to change the command name used if they 
+	conflict with other user commands.
+
+	Starting options:
+		/full/path/to/directoryone - using vifm /usr/local will start vifm 
+			with the /usr/local directory.  The default is to start vifm in 
+			the current directory.
+		/full/path/to/directorytwo - using two full paths will start vifm with
+			the first path in the left file list and the second path in the right
+			file list.
+		--version - will print the version number and exit.
+		--help - will show help file.
+		-f - will run vifm but selecting a file will write the file name to 
+			~/.vifm/vimfiles instead of opening the file.  This is used for the 
+			vifm.vim script to load files from vifm into a running vim.
+
+Menus
+	bookmarks escape or Ctrl-c to abort j and k to move through 
+		dd on a bookmark to remove. 
+
+	sort menu j and k to move - Escape or Ctrl-c to clear - return or l to
+	select and exit the menu.
+
+Reserved :commands
+		!
+		change
+		cd
+		cmap
+		com
+		d
+		delc
+		e
+		empty
+		fi
+		fil
+		file
+		filter
+		h
+		help
+		his
+		history
+		in
+		invert
+		map
+		marks
+		nmap
+		pw
+		pwd
+		q
+		s
+		screen
+		sh
+		sort
+		unmap
+		view
+		vifm
+		vmap
+		x
+
diff --git a/.vifm/vifmrc b/.vifm/vifmrc
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+++ b/.vifm/vifmrc
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+" vim: filetype=vifm :
+" You can edit this file by hand.
+" The " character at the beginning of a line comments out the line.
+" Blank lines are ignored.
+" The basic format for each item is shown with an example.
+
+" This is the actual command used to start vi.  The default is vim.
+" If you would like to use another vi clone such Elvis or Vile
+" you will need to change this setting.
+
+set vicmd=vim
+" set vicmd=elvis\ -G\ termcap
+" set vicmd=vile
+
+" Trash Directory
+" The default is to move files that are deleted with dd or :d to
+" the trash directory.  If you change this you will not be able to move
+" files by deleting them and then using p to put the file in the new location.
+" I recommend not changing this until you are familiar with vifm.
+" This probably shouldn't be an option.
+
+set trash
+
+" This is how many directories to store in the directory history.
+
+set history=100
+
+" Follow links on l or Enter.
+
+set followlinks
+
+" With this option turned on you can run partially entered commands with
+" unambiguous beginning using :! (e.g. :!Te instead of :!Terminal or :!Te<tab>).
+
+set nofastrun
+
+" Natural sort of (version) numbers within text.
+
+set nosortnumbers
+
+" Maximum number of changes that can be undone.
+
+set undolevels=100
+
+" If you installed the vim.txt help file set vimhelp.
+" If would rather use a plain text help file set novimhelp.
+
+set novimhelp
+
+" If you would like to run an executable file when you
+" press return on the file name set this.
+
+set norunexec
+
+" Use KiB, MiB, ... instead of K, M, ...
+
+set noiec
+
+" Selected color scheme
+
+colorscheme matrix
+
+" The FUSE_HOME directory will be used as a root dir for all FUSE mounts.
+" Unless it exists with write/exec permissions set, vifm will attempt to
+" create it.
+
+set fusehome=/tmp/vifm_FUSE
+
+" Format for displaying time in file list. For example:
+" set timefmt=%m/%d-%H:%M
+" See man date or man strftime for details.
+
+set timefmt=\ %m/%d\ %H:%M
+
+" :mark mark /full/directory/path [filename]
+
+" :com[mand] command_name action
+" The following macros can be used in a command
+" %a is replaced with the user arguments.
+" %c the current file under the cursor.
+" %C the current file under the cursor in the other directory.
+" %f the current selected file, or files.
+" %F the current selected file, or files in the other directory.
+" %b same as %f %F.
+" %d the current directory name.
+" %D the other window directory name.
+" %m run the command in a menu window
+
+" The file type is for the default programs to be used with
+" a file extension.
+" :filetype pattern1,pattern2 defaultprogram,program2
+" :fileviewer pattern1,pattern2 consoleviewer
+" The other programs for the file type can be accessed with the :file command
+" The command macros %f, %F, %d, %F may be used in the commands.
+" The %a macro is ignored.  To use a % you must put %%.
+
+" For automated FUSE mounts, you must register an extension with FILETYPE=..
+" in one of following formats:
+"
+" :filetype extensions FUSE_MOUNT|some_mount_command using %SOURCE_FILE and %DESTINATION_DIR variables
+" %SOURCE_FILE and %DESTINATION_DIR are filled in by vifm at runtime.
+" A sample line might look like this:
+" :filetype *.zip,*.jar,*.war,*.ear FUSE_MOUNT|fuse-zip %SOURCE_FILE %DESTINATION_DIR
+"
+" :filetype extensions FUSE_MOUNT2|some_mount_command using %PARAM and %DESTINATION_DIR variables
+" %PARAM and %DESTINATION_DIR are filled in by vifm at runtime.
+" A sample line might look like this:
+" :filetype *.ssh FUSE_MOUNT2|sshfs %PARAM %DESTINATION_DIR
+" %PARAM value is filled from the first line of file (whole line).
+" Example first line for SshMount filetype: root@127.0.0.1:/
+"
+" You can also add %CLEAR if you want to clear screen before running FUSE
+" program.
+
+" What should be saved automatically between vifm runs
+" Like in previous versions of vifm
+" set vifminfo=options,filetypes,commands,bookmarks,tui,state,cs,chistory,shistory,dirstack,registers,phistory
+" Like in vi
+set vifminfo=bookmarks,chistory,shistory,phistory
+
+" Personal additions
+map , :
+map <tab> space
+map <space>q :q<cr>
+filetype *.pdf,*.dvi zathura
+set number
diff --git a/.vifm/vifmrc.bak b/.vifm/vifmrc.bak
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+# You can edit this file by hand.
+# The # character at the beginning of a line comments out the line.
+# Blank lines are ignored.
+# The basic format for each item is shown with an example.
+# The '=' character is used to separate fields within a single line.
+# Most settings are true = 1 or false = 0.
+
+# This is the actual command used to start vi.  The default is vi.
+# If you would like to use another vi clone such as Vim, Elvis, or Vile
+# you will need to change this setting.
+
+VI_COMMAND=vim
+# VI_COMMAND=vim
+# VI_COMMAND=elvis -G termcap
+# VI_COMMAND=vile
+
+# Trash Directory
+# The default is to move files that are deleted with dd or :d to
+# the trash directory.  1 means use the trash directory 0 means
+# just use rm.  If you change this you will not be able to move
+# files by deleting them and then using p to put the file in the new location.
+# I recommend not changing this until you are familiar with vifm.
+# This probably shouldn't be an option.
+
+USE_TRASH=1
+
+# Show only one Window
+# If you would like to start vifm with only one window set this to 1
+
+USE_ONE_WINDOW=0
+
+# Screen configuration.  If you would like to use vifm with
+# the screen program set this to 1.
+
+USE_SCREEN=0
+
+# 1 means use color if the terminal supports it.
+# 0 means don't use color even if supported.
+
+# This is how many files to show in the directory history menu.
+
+HISTORY_LENGTH=100
+
+# The sort type is how the files will be sorted in the file listing.
+# Sort by File Extension = 0
+# Sort by File Name = 1
+# Sort by Group ID = 2
+# Sort by Group Name = 3
+# Sort by Mode = 4
+# Sort by Owner ID = 5
+# Sort by Owner Name = 6
+# Sort by Size = 7
+# Sort by Time Accessed =8
+# Sort by Time Changed =9
+# Sort by Time Modified =10
+# This can be set with the :sort command in vifm.
+
+LEFT_WINDOW_SORT_TYPE=1
+
+RIGHT_WINDOW_SORT_TYPE=1
+
+# The regular expression used to filter files out of
+# the directory listings.
+# LWIN_FILTER=\.o$ and LWIN_INVERT=1 would filter out all
+# of the .o files from the directory listing. LWIN_INVERT=0
+# would show only the .o files
+
+LWIN_FILTER=\.o$
+LWIN_INVERT=1
+RWIN_FILTER=\.o$
+RWIN_INVERT=1
+
+# If you installed the vim.txt help file change this to 1.
+# If would rather use a plain text help file set this to 0.
+
+USE_VIM_HELP=0
+
+# If you would like to run an executable file when you 
+# press return on the file name set this to 1.
+
+RUN_EXECUTABLE=0
+
+# BOOKMARKS=mark=/full/directory/path=filename
+
+BOOKMARKS=H=/home/urbain=../
+BOOKMARKS=m=/home/urbain/Dropbox/phd/literature/October 14=Shear_viscosity.pdf
+BOOKMARKS=p=/home/urbain/Dropbox/phd=../
+BOOKMARKS=z=/home/urbain/.vifm=../
+
+# COMMAND=command_name=action
+# The following macros can be used in a command
+# %a is replaced with the user arguments.
+# %f the current selected file, or files.
+# %F the current selected file, or files in the other directoy.
+# %d the current directory name.
+# %D the other window directory name.
+# %m run the command in a menu window
+
+
+# The file type is for the default programs to be used with
+# a file extension. 
+# FILETYPE=description=extension1,extension2=defaultprogram, program2
+# FILETYPE=Web=html,htm,shtml=links,mozilla,elvis
+# would set links as the default program for .html .htm .shtml files
+# The other programs for the file type can be accessed with the :file command
+# The command macros %f, %F, %d, %F may be used in the commands.
+# The %a macro is ignored.  To use a % you must put %%.
+