Initial commit

13 files changed, 574 insertions, 0 deletions

diff --git a/.bashrc b/.bashrc
new file mode 100644
index 0000000..a5f83b7
--- /dev/null
+++ b/.bashrc
@@ -0,0 +1,114 @@
+# ~/.bashrc: executed by bash(1) for non-login shells.
+# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
+# for examples
+
+# If not running interactively, don't do anything
+case $- in
+    *i*) ;;
+      *) return;;
+esac
+
+# don't put duplicate lines or lines starting with space in the history.
+# See bash(1) for more options
+HISTCONTROL=ignoreboth
+
+# append to the history file, don't overwrite it
+shopt -s histappend
+
+# for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
+HISTSIZE=1000
+HISTFILESIZE=2000
+
+# check the window size after each command and, if necessary,
+# update the values of LINES and COLUMNS.
+shopt -s checkwinsize
+
+# If set, the pattern "**" used in a pathname expansion context will
+# match all files and zero or more directories and subdirectories.
+#shopt -s globstar
+
+# make less more friendly for non-text input files, see lesspipe(1)
+[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
+
+# set variable identifying the chroot you work in (used in the prompt below)
+if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
+    debian_chroot=$(cat /etc/debian_chroot)
+fi
+
+# set a fancy prompt (non-color, unless we know we "want" color)
+case "$TERM" in
+    xterm-color) color_prompt=yes;;
+esac
+
+# uncomment for a colored prompt, if the terminal has the capability; turned
+# off by default to not distract the user: the focus in a terminal window
+# should be on the output of commands, not on the prompt
+#force_color_prompt=yes
+
+if [ -n "$force_color_prompt" ]; then
+    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
+	# We have color support; assume it's compliant with Ecma-48
+	# (ISO/IEC-6429). (Lack of such support is extremely rare, and such
+	# a case would tend to support setf rather than setaf.)
+	color_prompt=yes
+    else
+	color_prompt=
+    fi
+fi
+
+if [ "$color_prompt" = yes ]; then
+    PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
+else
+    PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
+fi
+unset color_prompt force_color_prompt
+
+# If this is an xterm set the title to user@host:dir
+case "$TERM" in
+xterm*|rxvt*)
+    PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
+    ;;
+*)
+    ;;
+esac
+
+# enable color support of ls and also add handy aliases
+if [ -x /usr/bin/dircolors ]; then
+    test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
+    alias ls='ls --color=auto'
+    #alias dir='dir --color=auto'
+    #alias vdir='vdir --color=auto'
+
+    alias grep='grep --color=auto'
+    alias fgrep='fgrep --color=auto'
+    alias egrep='egrep --color=auto'
+fi
+
+# some more ls aliases
+alias ll='ls -alF'
+alias la='ls -A'
+alias l='ls -CF'
+
+# Add an "alert" alias for long running commands.  Use like so:
+#   sleep 10; alert
+alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
+
+# Alias definitions.
+# You may want to put all your additions into a separate file like
+# ~/.bash_aliases, instead of adding them here directly.
+# See /usr/share/doc/bash-doc/examples in the bash-doc package.
+
+if [ -f ~/.bash_aliases ]; then
+    . ~/.bash_aliases
+fi
+
+# enable programmable completion features (you don't need to enable
+# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
+# sources /etc/bash.bashrc).
+if ! shopt -oq posix; then
+  if [ -f /usr/share/bash-completion/bash_completion ]; then
+    . /usr/share/bash-completion/bash_completion
+  elif [ -f /etc/bash_completion ]; then
+    . /etc/bash_completion
+  fi
+fi
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..371b274
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,3 @@
+# Plugins managed by Vundle
+.vim/bundle/
+.oh-my-zsh/
diff --git a/.vim/after/ftplugin/tex/folding.vim b/.vim/after/ftplugin/tex/folding.vim
new file mode 100644
index 0000000..2e8b612
--- /dev/null
+++ b/.vim/after/ftplugin/tex/folding.vim
@@ -0,0 +1,34 @@
+function! TexFolds()
+    let thisline = getline(v:lnum)
+    if match(thisline,'^\\chapter') >= 0
+        return ">1"
+    elseif match(thisline,'^\\section') >= 0
+        return ">1"
+    elseif match(thisline,'^\\subsection') >=0 
+        return ">1"
+    elseif match(thisline,'^\\subsubsection') >=0
+        return ">1"
+    else
+        return "="
+    endif
+endfunction
+
+function! TexFoldText()
+    let startline = getline(v:foldstart)
+    let title = substitute(startline,'^.*{\(.*\)}.*$','\1',"")
+    if match(startline,'^\\chapter') >= 0
+        return '*' . title . ''
+    elseif match(startline,'^\\section') >= 0
+        return '    # ' . title
+    elseif match(startline,'^\\subsection') >=0
+        return '        ## ' . title
+    elseif match(startline,'^\\subsubsection') >=0
+        return '            ### ' . title
+    else
+        echom "Error, fold not recognized"
+    endif
+endfunction
+
+setlocal foldmethod=expr
+setlocal foldexpr=TexFolds()
+setlocal foldtext=TexFoldText()
diff --git a/.vim/after/ftplugin/vim/folding.vim b/.vim/after/ftplugin/vim/folding.vim
new file mode 100644
index 0000000..773b38e
--- /dev/null
+++ b/.vim/after/ftplugin/vim/folding.vim
@@ -0,0 +1,25 @@
+function! VimFolds()
+    let thisline = getline(v:lnum)
+    if match(thisline,'^""  ') >= 0
+        return ">1"
+    elseif match(thisline,'^"  ') >=0
+        return ">1"
+    else
+        return "="
+    endif
+endfunction
+
+function! VimFoldText()
+    let startline = getline(v:foldstart)
+    if match(startline,'^""  ') >= 0
+        let title = substitute(startline,'^""  \(.*\)$','\1',"")
+        return '# ' . title
+    elseif match(startline,'^"  ') >=0
+        let title = substitute(startline,'^"  \(.*\)$','\1',"")
+        return '    ## ' .title
+    endif
+endfunction
+
+setlocal foldmethod=expr
+setlocal foldexpr=VimFolds()
+setlocal foldtext=VimFoldText()
diff --git a/.vim/after/syntax/cpp.vim b/.vim/after/syntax/cpp.vim
new file mode 100644
index 0000000..4da741d
--- /dev/null
+++ b/.vim/after/syntax/cpp.vim
@@ -0,0 +1,3 @@
+syntax keyword mPigroup pi
+hi def link mPigroup Todo
+
diff --git a/.vim/after/syntax/cpp.vim~ b/.vim/after/syntax/cpp.vim~
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/.vim/after/syntax/cpp.vim~
diff --git a/.vim/after/syntax/tex.vim b/.vim/after/syntax/tex.vim
new file mode 100644
index 0000000..a40cc30
--- /dev/null
+++ b/.vim/after/syntax/tex.vim
@@ -0,0 +1,6 @@
+syn match texMathSymbol '\\arr\>' contained conceal cchar=←
+syn match texMathSymbol '\\,' contained conceal cchar= 
+syn match texMathSymbol '\\mathcal' contained conceal cchar= 
+syn match texMathSymbol '\\text' contained conceal cchar= 
+syn match texMathSymbol '\\mathbb' contained conceal cchar= 
+syn match texMathSymbol '\\quad' contained conceal cchar=  
diff --git a/.vim/after/syntax/tex.vim~ b/.vim/after/syntax/tex.vim~
new file mode 100644
index 0000000..4e1d112
--- /dev/null
+++ b/.vim/after/syntax/tex.vim~
@@ -0,0 +1,6 @@
+syn match texMathSymbol '\\arr\>' contained conceal cchar=←
+syn match texMathSymbol '\\,' contained conceal cchar= 
+syn match texMathSymbol '\\mathcal' contained conceal cchar= 
+syn match texMathSymbol '\\text' contained conceal cchar= 
+syn match texMathSymbol '\\mathbb' contained conceal cchar= 
+syn match texMathSymbol '\\quad' contained conceal cchar= 
diff --git a/.vim/colors/mine.vim b/.vim/colors/mine.vim
new file mode 100644
index 0000000..653682e
--- /dev/null
+++ b/.vim/colors/mine.vim
@@ -0,0 +1,29 @@
+" Vim color file
+"  Maintainer: Urbain
+" Last Change: 2002/10/14 Mon 16:41.
+"     version: 1.0
+" This color scheme uses a light background.
+
+set background=light
+hi clear
+if exists("syntax_on")
+   syntax reset
+endif
+
+let colors_name = "mine"
+
+" Syntax group
+hi Comment gui=none guifg=#af5f00
+hi Normal guibg=white guifg=Black
+hi Type gui=none guifg=#005f00
+hi Statement gui=none guifg=#5f0000
+hi Special guifg=Black
+hi Constant guifg=Gray
+hi Error guifg=Red guibg=White
+hi Preproc guifg=Blue "\end
+hi Constant guifg=Green "\ $$
+hi Identifier guifg=Blue "\begin
+hi LineNr gui=none guifg=Gray
+hi FoldColumn guibg=#F5F4FD
+hi Todo guibg=white gui=underline,italic guifg=Red
+hi Conceal guibg=White guifg=DarkGreen
diff --git a/.vim/colors/mine.vim~ b/.vim/colors/mine.vim~
new file mode 100644
index 0000000..653682e
--- /dev/null
+++ b/.vim/colors/mine.vim~
@@ -0,0 +1,29 @@
+" Vim color file
+"  Maintainer: Urbain
+" Last Change: 2002/10/14 Mon 16:41.
+"     version: 1.0
+" This color scheme uses a light background.
+
+set background=light
+hi clear
+if exists("syntax_on")
+   syntax reset
+endif
+
+let colors_name = "mine"
+
+" Syntax group
+hi Comment gui=none guifg=#af5f00
+hi Normal guibg=white guifg=Black
+hi Type gui=none guifg=#005f00
+hi Statement gui=none guifg=#5f0000
+hi Special guifg=Black
+hi Constant guifg=Gray
+hi Error guifg=Red guibg=White
+hi Preproc guifg=Blue "\end
+hi Constant guifg=Green "\ $$
+hi Identifier guifg=Blue "\begin
+hi LineNr gui=none guifg=Gray
+hi FoldColumn guibg=#F5F4FD
+hi Todo guibg=white gui=underline,italic guifg=Red
+hi Conceal guibg=White guifg=DarkGreen
diff --git a/.vimrc b/.vimrc
new file mode 100644
index 0000000..13a0078
--- /dev/null
+++ b/.vimrc
@@ -0,0 +1,232 @@
+
+""  Required by Vundle
+set nocompatible
+filetype off
+set rtp+=~/.vim/bundle/vundle/
+call vundle#rc()
+
+""  Plugins
+Plugin 'gmarik/Vundle'
+Plugin 'LaTeX-Box-Team/LaTeX-Box'
+Plugin 'fugitive.vim'
+Plugin 'UltiSnips'
+Plugin 'kien/ctrlp.vim'
+Plugin 'tpope/vim-surround'
+Plugin 'scrooloose/nerdtree'
+"Plugin 'OmniCppComplete'
+Plugin 'tommcdo/vim-exchange'
+"Plugin 'vim-scripts/Colour-Sampler-Pack'
+" Plugin 'EasyMotion'
+Plugin 'unimpaired.vim'
+Plugin 'Tabular'
+Plugin 'tComment'
+Plugin 'Gundo'
+Plugin 'altercation/vim-colors-solarized'
+"Plugin 'xolox/vim-misc'
+"Bundle 'xolox/vim-colorscheme-switcher'
+
+filetype plugin indent on
+
+""  Configuration  
+
+"  UltiSnips
+let g:UltiSnipsExpandTrigger="<tab>"
+let g:UltiSnipsJumpForwardTrigger="<tab>"
+let g:UltiSnipsJumpBackwardTrigger="<s-tab>"
+let g:UltiSnipsEditSplit="horizontal"
+let g:UltiSnipsSnippetsDir="~/.vim/UltiSnips"
+noremap <c-tab> :UltiSnipsEdit<Return>
+
+"  Latex-Box
+let g:tex_flavor='latex'
+let g:tex_conceal= 'adgm'
+let g:LatexBox_Folding=0
+
+"  Gundo
+nnoremap <F5> :GundoToggle<cr>
+
+"  Nerdtree
+nnoremap <F3> :NERDTreeToggle<cr>
+let NERDTreeIgnore=['\.pdf$', '\~$','\.toc$',
+            \ '\.fls$','\.bbl$','\.blg$',
+            \ '\.out$', '\.log$','\.aux$','\.sty$',
+            \ '\.fdb_latexmk$', '\.synctex.gz$','\.latexmain$']
+
+""  Options  
+
+"  Tabs and indent
+set smartindent
+set nosmarttab
+set expandtab
+set tabstop=4
+set softtabstop=4
+set shiftwidth=4
+set autoindent
+set cindent
+
+"  Folds
+set foldcolumn=0
+set foldenable
+set foldmethod=expr
+set foldlevel=0
+
+"  Search
+set hlsearch
+set incsearch
+
+"  Back up files
+set noswapfile
+set nowritebackup
+set undofile
+set undodir=/home/urbain/.vimundo/
+
+"  Layout window
+set number
+set ruler
+set showcmd
+set listchars=tab:▸\ ,eol:¬
+set fillchars=fold:\ ,vert:\ ,
+set showbreak=...
+set colorcolumn=0
+set scrolloff=3
+set t_Co=256
+set guitablabel=%N\ %t\ %M
+
+"  Layout text
+set wrap
+set linebreak
+set textwidth=0
+set conceallevel=2
+set guifont=Monaco\ 11
+
+"  Case and spell
+set nospell
+set smartcase
+set ignorecase
+
+"  General
+set noautochdir
+set wildmenu
+set cpoptions+=I
+set encoding=utf-8
+
+
+""  Custom mappings
+
+"  Definition of leader and localleader
+let mapleader = "\\"
+let maplocalleader = "+"
+
+"  Leader maps
+nmap <Space> <Leader>
+nnoremap <Leader>h :set hlsearch!<cr>
+nnoremap <Leader>n :set relativenumber!<cr>
+nnoremap <Leader>q :q!<cr>
+nnoremap <Leader>sv :source ~/.vimrc<cr>
+nnoremap <Leader>sc ;source %
+nnoremap <Leader>w :w<cr>
+nnoremap <Leader>te :tabedit 
+nnoremap <Leader>tn :tabnew<cr>
+nnoremap <Leader>to :tabonly<cr>
+
+"  Other maps
+nnoremap <Return> o<Esc>
+nnoremap <s-Return> O<Esc>
+nnoremap J mzJ`z
+nnoremap - za
+nnoremap <c-y> 3<c-y>
+nnoremap <c-e> 3<c-e>
+
+nnoremap j gj
+nnoremap k gk
+nnoremap $ g$
+nnoremap ^ g^
+nnoremap gj j
+nnoremap gk k
+nnoremap g$ $
+nnoremap g^ ^
+
+vnoremap j gj
+vnoremap k gk
+vnoremap $ g$
+vnoremap ^ g^
+vnoremap gj j
+vnoremap gk k
+vnoremap g$ $
+vnoremap g^ ^
+""  Latex  
+nmap <buffer> <F2> <Plug>LatexChangeEnv
+let g:tex_fast="" 
+
+"  Synctex 
+function! LatexEvinceSearch()
+    execute "!cd " . LatexBox_GetTexRoot() . '; evince_vim_dbus.py EVINCE "`basename ' . LatexBox_GetOutputFile(). '`" ' . line('.') . ' "%:p"'
+endfun
+
+command! LatexEvinceSearch call LatexEvinceSearch()
+
+autocmd FileType tex map <F6> :silent LatexEvinceSearch <Return>
+autocmd Filetype tex call SetTexOptions()
+
+""  Layout  
+if has("gui_running")
+    set background=dark
+    colorscheme solarized
+else
+    set background=dark
+    colorscheme solarized
+end
+
+hi Cursor guifg=white guibg=blue
+hi iCursor guifg=black guibg=green
+hi! link conceal normal
+hi! link folded normal
+
+""  Functions  
+function! Tex_ForwardSearchLaTeX()
+    let cmd = 'evince_forward_search ' . fnamemodify(LatexBox_GetMainTexFile(), ":p:r") .  '.pdf ' . line(".") . ' ' . expand("%:p")
+    let output = system(cmd)
+endfunction
+
+function! SetTexOptions()
+
+    inoremap (( \left(
+    inoremap )) \right)
+    inoremap {{ \left\{
+    inoremap }} \right\}
+    inoremap [[ \left[
+    inoremap ]] \right]
+    inoremap == \,=\,
+    inoremap >> \,\geq\,
+    inoremap << \,\leq\,
+    inoremap ++ \,+\,
+    inoremap -- \,-\,
+
+    imap `a \alpha
+    imap `b \beta
+    imap `g \gamma
+    imap `d \delta
+    imap `e \varepsilon
+    imap `z \zeta
+    imap `h \eta
+    imap `t \theta
+    imap `i \iota
+    imap `k \kappa
+    imap `l \lambda
+    imap `m \mu
+    imap `n \nu
+    imap `x \xi
+    imap `r \rho
+    imap `s \sigma
+    imap `f \phi
+    imap `p \pi
+    imap `w \omega
+
+endfunction
+
+""  Autocommands  
+augroup autorelead_vimrc
+    au! 
+    au BufWritePost ~/.vimrc source ~/.vimrc
+augroup END
+
diff --git a/.zshrc b/.zshrc
new file mode 100644
index 0000000..81034bd
--- /dev/null
+++ b/.zshrc
@@ -0,0 +1,80 @@
+# Path to your oh-my-zsh installation.
+export ZSH=$HOME/.oh-my-zsh
+
+# Set name of the theme to load.
+# Look in ~/.oh-my-zsh/themes/
+# Optionally, if you set this to "random", it'll load a random theme each
+# time that oh-my-zsh is loaded.
+ZSH_THEME="eastwood"
+
+# Uncomment the following line to use case-sensitive completion.
+# CASE_SENSITIVE="true"
+
+# Uncomment the following line to disable bi-weekly auto-update checks.
+# DISABLE_AUTO_UPDATE="true"
+
+# Uncomment the following line to change how often to auto-update (in days).
+# export UPDATE_ZSH_DAYS=13
+
+# Uncomment the following line to disable colors in ls.
+# DISABLE_LS_COLORS="true"
+
+# Uncomment the following line to disable auto-setting terminal title.
+# DISABLE_AUTO_TITLE="true"
+
+# Uncomment the following line to enable command auto-correction.
+# ENABLE_CORRECTION="true"
+
+# Uncomment the following line to display red dots whilst waiting for completion.
+# COMPLETION_WAITING_DOTS="true"
+
+# Uncomment the following line if you want to disable marking untracked files
+# under VCS as dirty. This makes repository status check for large repositories
+# much, much faster.
+# DISABLE_UNTRACKED_FILES_DIRTY="true"
+
+# Uncomment the following line if you want to change the command execution time
+# stamp shown in the history command output.
+# The optional three formats: "mm/dd/yyyy"|"dd.mm.yyyy"|"yyyy-mm-dd"
+# HIST_STAMPS="mm/dd/yyyy"
+
+# Would you like to use another custom folder than $ZSH/custom?
+# ZSH_CUSTOM=/path/to/new-custom-folder
+
+# Which plugins would you like to load? (plugins can be found in ~/.oh-my-zsh/plugins/*)
+# Custom plugins may be added to ~/.oh-my-zsh/custom/plugins/
+# Example format: plugins=(rails git textmate ruby lighthouse)
+# Add wisely, as too many plugins slow down shell startup.
+plugins=(git)
+
+source $ZSH/oh-my-zsh.sh
+
+# User configuration
+
+export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games"
+# export MANPATH="/usr/local/man:$MANPATH"
+
+# You may need to manually set your language environment
+# export LANG=en_US.UTF-8
+
+# Preferred editor for local and remote sessions
+# if [[ -n $SSH_CONNECTION ]]; then
+#   export EDITOR='vim'
+# else
+#   export EDITOR='mvim'
+# fi
+
+# Compilation flags
+# export ARCHFLAGS="-arch x86_64"
+
+# ssh
+# export SSH_KEY_PATH="~/.ssh/dsa_id"
+
+# Set personal aliases, overriding those provided by oh-my-zsh libs,
+# plugins, and themes. Aliases can be placed here, though oh-my-zsh
+# users are encouraged to define aliases within the ZSH_CUSTOM folder.
+# For a full list of active aliases, run `alias`.
+#
+# Example aliases
+# alias zshconfig="mate ~/.zshrc"
+# alias ohmyzsh="mate ~/.oh-my-zsh"
diff --git a/install.sh b/install.sh
new file mode 100755
index 0000000..acc6395
--- /dev/null
+++ b/install.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+dir=~/dotfiles                    # dotfiles directory
+olddir=~/dotfiles_old             # old dotfiles backup directory
+files="bashrc vimrc vim zshrc oh-my-zsh"    # list of files/folders to symlink in homedir
+
+mkdir -p $olddir
+cd $dir
+for file in $files; do
+    echo $file
+    mv ~/.$file ~/dotfiles_old/
+    ln -s $dir/.$file ~
+done